If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ), 'gf_id' => 'HOM05D000811', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000811' ), 'data_identifier' => 'HOM05D000811', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000811', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '728', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16380' => 'bna', 'A03p03270' => 'bna', 'A03p03280' => 'bna', 'A03p03290' => 'bna', 'A03p03300' => 'bna', 'A03p03310' => 'bna', 'A03p47250' => 'bna', 'A03p55780' => 'bna', 'A06p33380' => 'bna', 'A07p02600' => 'bna', 'A08p28110' => 'bna', 'A09p11680' => 'bna', 'A10p29200' => 'bna', 'A10p29210' => 'bna', 'Aa31LG11G1820' => 'aar', 'Aa31LG2G11330' => 'aar', 'Aa31LG3G18940' => 'aar', 'Aa31LG7G10500' => 'aar', 'Aa31LG8G15210' => 'aar', 'Aa31LG8G15220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1381' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4020' => 'aag', 'Actinidia00122' => 'ach', 'Actinidia01037' => 'ach', 'Actinidia08844' => 'ach', 'Actinidia13619' => 'ach', 'Actinidia20649' => 'ach', 'Actinidia22988' => 'ach', 'Actinidia22989' => 'ach', 'Actinidia27847' => 'ach', 'Actinidia31003' => 'ach', 'Actinidia31660' => 'ach', 'Actinidia31765' => 'ach', 'Actinidia36336' => 'ach', 'Actinidia36768' => 'ach', 'Ah.02g124470' => 'amhyb', 'Ah.02g124490' => 'amhyb', 'Ah.02g124500' => 'amhyb', 'Ah.03g141760' => 'amhyb', 'Ah.07g199950' => 'amhyb', 'Ah.12g053900' => 'amhyb', 'Ah.15g095440' => 'amhyb', 'AL3G51180' => 'aly', 'AL3G51190' => 'aly', 'AL6G17760' => 'aly', 'AL6G17770' => 'aly', 'AL7G28020' => 'aly', 'AL8G38380' => 'aly', 'Aqoxy3G00654' => 'aox', 'Aqoxy3G01367' => 'aox', 'Aqoxy5G01449' => 'aox', 'Aqoxy7G00867' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4A36F8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RHWF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66CB8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BG9Q08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHD7G8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IAHM14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JKZZ7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCWP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1352T' => 'arhy', 'AT2G18030' => 'ath', 'AT2G18040' => 'ath', 'AT4G25130' => 'ath', 'AT5G07460' => 'ath', 'AT5G07470' => 'ath', 'AT5G61640' => 'ath', 'ATR0147G012' => 'atr', 'ATR0147G018' => 'atr', 'ATR0665G160' => 'atr', 'ATR0686G201' => 'atr', 'Atru.chr1.927' => 'acertr', 'Atru.chr3.785' => 'acertr', 'Atru.chr3.786' => 'acertr', 'Atru.chr9.1781' => 'acertr', 'Atru.chr9.1783' => 'acertr', 'Atru.chr9.1786' => 'acertr', 'Atru.chr9.1798' => 'acertr', 'Atru.chr9.1802' => 'acertr', 'Atru.chr9.969' => 'acertr', 'AUR62001252' => 'cqu', 'AUR62007186' => 'cqu', 'AUR62018817' => 'cqu', 'AUR62025756' => 'cqu', 'AUR62043612' => 'cqu', 'AUR62043613' => 'cqu', 'AUR62044454' => 'cqu', 'AUR62044455' => 'cqu', 'BcaB01g04540' => 'bca', 'BcaB01g05698' => 'bca', 'BcaB01g05699' => 'bca', 'BcaB01g05700' => 'bca', 'BcaB01g05701' => 'bca', 'BcaB01g06040' => 'bca', 'BcaB01g06041' => 'bca', 'BcaB01g06042' => 'bca', 'BcaB01g06043' => 'bca', 'BcaB03g16590' => 'bca', 'BcaB06g26425' => 'bca', 'BcaB07g31695' => 'bca', 'BcaB08g34786' => 'bca', 'BcaC04g22934' => 'bca', 'BcaC06g32432' => 'bca', 'BcaC06g32433' => 'bca', 'BcaC06g32434' => 'bca', 'BcaC06g32435' => 'bca', 'BcaC06g32477' => 'bca', 'BcaC06g32478' => 'bca', 'BcaC06g32479' => 'bca', 'BcaC06g32481' => 'bca', 'BcaC06g32482' => 'bca', 'BcaC06g32836' => 'bca', 'BcaC06g33142' => 'bca', 'BcaC06g33260' => 'bca', 'BcaC06g36361' => 'bca', 'BcaC09g50806' => 'bca', 'BcaNung04002' => 'bca', 'BolC1t01984H' => 'bol', 'BolC3t12908H' => 'bol', 'BolC3t12909H' => 'bol', 'BolC3t12910H' => 'bol', 'BolC3t12911H' => 'bol', 'BolC3t18151H' => 'bol', 'BolC6t36506H' => 'bol', 'BolC7t40891H' => 'bol', 'BolC7t45057H' => 'bol', 'BolC7t45892H' => 'bol', 'BolC9t54263H' => 'bol', 'BolC9t59702H' => 'bol', 'BolC9t59703H' => 'bol', 'BraA01t01593Z' => 'bra', 'BraA03t09679Z' => 'bra', 'BraA03t09680Z' => 'bra', 'BraA03t09681Z' => 'bra', 'BraA03t09682Z' => 'bra', 'BraA03t09683Z' => 'bra', 'BraA03t13852Z' => 'bra', 'BraA03t14646Z' => 'bra', 'BraA06t26271Z' => 'bra', 'BraA07t28059Z' => 'bra', 'BraA08t34741Z' => 'bra', 'BraA09t36813Z' => 'bra', 'BraA10t42938Z' => 'bra', 'BraA10t44967Z' => 'bra', 'BraA10t44968Z' => 'bra', 'C01p20530' => 'bna', 'C03p03700' => 'bna', 'C03p03710' => 'bna', 'C03p03720' => 'bna', 'C03p03730' => 'bna', 'C03p03740' => 'bna', 'C03p03750' => 'bna', 'C03p58940' => 'bna', 'C06p13450' => 'bna', 'C07p04900' => 'bna', 'C07p45360' => 'bna', 'C07p54060' => 'bna', 'C09p13720' => 'bna', 'C09p69590' => 'bna', 'C09p69600' => 'bna', 'CAN.G1329.5' => 'can', 'CAN.G1365.1' => 'can', 'CAN.G1671.2' => 'can', 'CAN.G17.19' => 'can', 'CAN.G247.3' => 'can', 'CAN.G472.55' => 'can', 'CAN.G724.41' => 'can', 'CANSAT56G0300' => 'cansat', 'CANSAT56G2453' => 'cansat', 'CANSAT78G0741' => 'cansat', 'CANSAT80G1232' => 'cansat', 'CARHR108520' => 'chi', 'CARHR108530' => 'chi', 'CARHR205670' => 'chi', 'CARHR205680' => 'chi', 'CARHR232520' => 'chi', 'CARHR275440' => 'chi', 'Carub.0003s3218' => 'cru', 'Carub.0003s3219' => 'cru', 'Carub.0006s0643' => 'cru', 'Carub.0006s0644' => 'cru', 'Carub.0006s0645' => 'cru', 'Carub.0007s1590' => 'cru', 'Carub.0008s2234' => 'cru', 'Ca_05514_v3' => 'car', 'Ca_06319_v3' => 'car', 'Ca_16107_v3' => 'car', 'Ca_22370_v3' => 'car', 'Ca_22371_v3' => 'car', 'Ca_30808_v3' => 'car', 'CBR_g40417' => 'cbr', 'CBR_g40629' => 'cbr', 'CBR_g54094' => 'cbr', 'CBR_g54097' => 'cbr', 'CBR_g552' => 'cbr', 'Cc00_g23380' => 'ccan', 'Cc00_g30270' => 'ccan', 'Cc00_g33000' => 'ccan', 'Cc00_g34170' => 'ccan', 'Cc02_g04840' => 'ccan', 'Cc04_g10780' => 'ccan', 'Cc07_g08630' => 'ccan', 'Cc07_g10610' => 'ccan', 'Cc07_g10620' => 'ccan', 'Cc07_g21120' => 'ccan', 'CDE02G2712' => 'cde', 'CDE02G4615' => 'cde', 'CDE04G1958' => 'cde', 'CDE05G3063' => 'cde', 'CDE05G3463' => 'cde', 'CDE07G0574' => 'cde', 'CDE08G1305' => 'cde', 'CDE09G0022' => 'cde', 'CDE11G0072' => 'cde', 'Cfa006960' => 'cfa', 'Cfa007901' => 'cfa', 'Cfa009509' => 'cfa', 'Cfa013597' => 'cfa', 'Cfa022799' => 'cfa', 'Ciclev10005637m.g' => 'ccl', 'Ciclev10013530m.g' => 'ccl', 'Ciclev10022366m.g' => 'ccl', 'Ciclev10026355m.g' => 'ccl', 'Ciclev10026785m.g' => 'ccl', 'CiPaw.07G057300' => 'cil', 'CiPaw.07G057400' => 'cil', 'CiPaw.07G183700' => 'cil', 'CiPaw.08G042300' => 'cil', 'CiPaw.08G132800' => 'cil', 'CiPaw.12G033800' => 'cil', 'ClCG01G020180' => 'cla', 'ClCG06G017580' => 'cla', 'ClCG07G008440' => 'cla', 'ClCG07G017140' => 'cla', 'COL.COLO4_04955' => 'col', 'COL.COLO4_09359' => 'col', 'COL.COLO4_21928' => 'col', 'COL.COLO4_21930' => 'col', 'COL.COLO4_37318' => 'col', 'COL.COLO4_37320' => 'col', 'Cpa.g.sc13.238' => 'cpa', 'Cpa.g.sc170.43' => 'cpa', 'Cpa.g.sc4.29' => 'cpa', 'Cpa.g.sc6.231' => 'cpa', 'Cpa.g.sc6.232' => 'cpa', 'Cre01.g012150' => 'cre', 'Cre06.g257650' => 'cre', 'Cre08.g380300' => 'cre', 'Cre10.g464850' => 'cre', 'Cre13.g570900' => 'cre', 'Cre16.g671900' => 'cre', 'CsaV3_1G000860' => 'csa', 'CsaV3_4G004340' => 'csa', 'CsaV3_4G005720' => 'csa', 'CsaV3_6G046980' => 'csa', 'CSS0001879' => 'camsi', 'CSS0003821' => 'camsi', 'CSS0004251' => 'camsi', 'CSS0008295' => 'camsi', 'CSS0011847' => 'camsi', 'CSS0012490' => 'camsi', 'CSS0014808' => 'camsi', 'CSS0015066' => 'camsi', 'CSS0016963' => 'camsi', 'CSS0024809' => 'camsi', 'CSS0028904' => 'camsi', 'CSS0030860' => 'camsi', 'CSS0031839' => 'camsi', 'CSS0041476' => 'camsi', 'DCAR_009460' => 'dca', 'DCAR_014635' => 'dca', 'DCAR_016616' => 'dca', 'DCAR_020167' => 'dca', 'DCAR_021499' => 'dca', 'DCAR_021598' => 'dca', 'Dinv16880' => 'din', 'Dinv33618' => 'din', 'Dinv34547' => 'din', 'Dinv34802' => 'din', 'Dinv38494' => 'din', 'Dinv40074' => 'din', 'Dinv40075' => 'din', 'Duzib138G0733' => 'dzi', 'Duzib138G1277' => 'dzi', 'Duzib147G0350' => 'dzi', 'Duzib147G1611' => 'dzi', 'Duzib187G1507' => 'dzi', 'Duzib205G0063' => 'dzi', 'Duzib205G1130' => 'dzi', 'Duzib205G1905' => 'dzi', 'Duzib264G0346' => 'dzi', 'Duzib264G0600' => 'dzi', 'ECA232G0730' => 'eca', 'ECA232G2345' => 'eca', 'ECA233G3200' => 'eca', 'ECA238G1572' => 'eca', 'ECA246G0760' => 'eca', 'EL10Ac2g04547' => 'bvu', 'EL10Ac5g12243' => 'bvu', 'EL10Ac7g18038' => 'bvu', 'EL10As8g23839' => 'bvu', 'Eucgr.A02929' => 'egr', 'Eucgr.B00172' => 'egr', 'Eucgr.J02408' => 'egr', 'Eucgr.J02409' => 'egr', 'Eucgr.J02411' => 'egr', 'Eucgr.J02417' => 'egr', 'FAN01G0368' => 'fan', 'FAN02G1033' => 'fan', 'FAN02G2932' => 'fan', 'FAN03G2014' => 'fan', 'FAN04G2508' => 'fan', 'FAN05G0499' => 'fan', 'FAN05G3534' => 'fan', 'FAN06G2980' => 'fan', 'FAN08G1388' => 'fan', 'FAN08G2761' => 'fan', 'FAN09G1557' => 'fan', 'FAN09G3320' => 'fan', 'FAN10G1512' => 'fan', 'FAN14G0683' => 'fan', 'FAN14G3764' => 'fan', 'FAN18G0961' => 'fan', 'FAN18G1383' => 'fan', 'FvH4_5g06741' => 'fve', 'FvH4_5g06742' => 'fve', 'FvH4_6g24550' => 'fve', 'FvH4_6g24560' => 'fve', 'FvH4_7g26800' => 'fve', 'Glyma.02G049400' => 'gma', 'Glyma.02G049500' => 'gma', 'Glyma.02G290800' => 'gma', 'Glyma.04G190800' => 'gma', 'Glyma.08G315900' => 'gma', 'Glyma.14G023900' => 'gma', 'Glyma.16G129800' => 'gma', 'Glyma.16G129900' => 'gma', 'Glyma.18G097000' => 'gma', 'Gohir.A03G060500' => 'ghi', 'Gohir.A07G054800' => 'ghi', 'Gohir.A09G248700' => 'ghi', 'Gohir.A10G097900' => 'ghi', 'Gohir.A11G041500' => 'ghi', 'Gohir.A12G060100' => 'ghi', 'Gohir.A12G195900' => 'ghi', 'Gohir.D03G105550' => 'ghi', 'Gohir.D07G059100' => 'ghi', 'Gohir.D07G059200' => 'ghi', 'Gohir.D09G249700' => 'ghi', 'Gohir.D10G090300' => 'ghi', 'Gohir.D11G044800' => 'ghi', 'Gohir.D12G060200' => 'ghi', 'Gohir.D12G198700' => 'ghi', 'Gorai.001G062600' => 'gra', 'Gorai.003G111700' => 'gra', 'Gorai.006G274000' => 'gra', 'Gorai.007G048100' => 'gra', 'Gorai.008G063300' => 'gra', 'Gorai.008G213400' => 'gra', 'Gorai.011G099300' => 'gra', 'GSVIVG01013877001' => 'vvi', 'GSVIVG01018799001' => 'vvi', 'GSVIVG01018801001' => 'vvi', 'GSVIVG01030993001' => 'vvi', 'GSVIVG01037014001' => 'vvi', 'HanXRQChr05g0144371' => 'han', 'HanXRQChr08g0223071' => 'han', 'HanXRQChr11g0327321' => 'han', 'HanXRQChr14g0441311' => 'han', 'HanXRQChr15g0482841' => 'han', 'HanXRQChr15g0487231' => 'han', 'HanXRQChr16g0497591' => 'han', 'Haze_03790' => 'cav', 'Haze_03791' => 'cav', 'Haze_07638' => 'cav', 'Haze_14179' => 'cav', 'Haze_22215' => 'cav', 'Haze_26512' => 'cav', 'Haze_26720' => 'cav', 'Haze_27534' => 'cav', 'Hma1.2p1_0065F.1_g035070' => 'hma', 'Hma1.2p1_0248F.1_g102050' => 'hma', 'Hma1.2p1_0258F.1_g104200' => 'hma', 'Hma1.2p1_0502F.1_g167810' => 'hma', 'Hma1.2p1_0743F.1_g211546' => 'hma', 'Hma1.2p1_1014F.1_g248000' => 'hma', 'Hma1.2p1_1305F.1_g274556' => 'hma', 'Hma1.2p1_2281F.1_g318770' => 'hma', 'Hma1.2p1_2281F.1_g318780' => 'hma', 'HPP92_002102' => 'vpl', 'HPP92_003523' => 'vpl', 'HPP92_008851' => 'vpl', 'HPP92_008861' => 'vpl', 'HPP92_009921' => 'vpl', 'HPP92_013493' => 'vpl', 'HPP92_025688' => 'vpl', 'HPP92_025689' => 'vpl', 'HPP92_025838' => 'vpl', 'Hund11309' => 'sun', 'Hund14039' => 'sun', 'Hund14040' => 'sun', 'Hund14474' => 'sun', 'Hund16171' => 'sun', 'Hund16485' => 'sun', 'Hund18517' => 'sun', 'Hund18565' => 'sun', 'Lalb_Chr04g0248441' => 'lal', 'Lalb_Chr05g0229871' => 'lal', 'Lalb_Chr05g0229881' => 'lal', 'Lalb_Chr11g0069951' => 'lal', 'Lalb_Chr15g0081081' => 'lal', 'Lalb_Chr16g0391191' => 'lal', 'Lalb_Chr16g0391201' => 'lal', 'Lalb_Chr17g0348471' => 'lal', 'Lalb_Chr23g0273441' => 'lal', 'Lj1A973G45' => 'lonja', 'Lj1A974G33' => 'lonja', 'Lj1g0007214' => 'lja', 'Lj2A466G44' => 'lonja', 'Lj2A474G39' => 'lonja', 'Lj4A217G58' => 'lonja', 'Lj4g0014424' => 'lja', 'Lj4g0023417' => 'lja', 'Lj6g0005073' => 'lja', 'Lj8A48T40' => 'lonja', 'Lj9A472T89' => 'lonja', 'LjContig00272g0020951' => 'lja', 'LjContig00272g0025013' => 'lja', 'Lsat_1_v5_gn_2_78761' => 'lsa', 'Lsat_1_v5_gn_3_74081' => 'lsa', 'Lsat_1_v5_gn_4_146701' => 'lsa', 'Lsat_1_v5_gn_4_146761' => 'lsa', 'Lsat_1_v5_gn_4_78501' => 'lsa', 'Lsat_1_v5_gn_8_14021' => 'lsa', 'Manes.01G144800' => 'mes', 'Manes.02G070400' => 'mes', 'Manes.02G103000' => 'mes', 'Manes.02G103100' => 'mes', 'Manes.06G130400' => 'mes', 'Manes.14G039800' => 'mes', 'Manes.14G056600' => 'mes', 'Mapoly0029s0018' => 'mpo', 'Mapoly0044s0097' => 'mpo', 'Mapoly0046s0103' => 'mpo', 'MBI04_g13836_MAGBIO' => 'mbi', 'MBI04_g40115_MAGBIO' => 'mbi', 'MBI05_g26504_MAGBIO' => 'mbi', 'MBI07_g03816_MAGBIO' => 'mbi', 'MBI07_g41530_MAGBIO' => 'mbi', 'MBI10_g03805_MAGBIO' => 'mbi', 'MCO03G446' => 'mco', 'MCO04G419' => 'mco', 'MCO05G623' => 'mco', 'MCO07G037' => 'mco', 'MCO07G075' => 'mco', 'MCO07G368' => 'mco', 'MCO08G038' => 'mco', 'MCO10G167' => 'mco', 'MD01G1176300' => 'mdo', 'MD01G1182900' => 'mdo', 'MD04G1047200' => 'mdo', 'MD04G1132300' => 'mdo', 'MD06G1160700' => 'mdo', 'MD06G1160900' => 'mdo', 'MD07G1247100' => 'mdo', 'MD08G1077500' => 'mdo', 'MD14G1166700' => 'mdo', 'Medtr3g051460' => 'mtr', 'Medtr3g075380' => 'mtr', 'Medtr5g092680' => 'mtr', 'Medtr8g076060' => 'mtr', 'Medtr8g076070' => 'mtr', 'MELO3C007891.2' => 'cme', 'MELO3C016378.2' => 'cme', 'MELO3C017632.2' => 'cme', 'MELO3C026238.2' => 'cme', 'Migut.B00125' => 'egut', 'Migut.F00536' => 'egut', 'Migut.F01208' => 'egut', 'Migut.H01149' => 'egut', 'Migut.H01151' => 'egut', 'Migut.O00216' => 'egut', 'MSTRG.23184' => 'ama', 'MSTRG.2701' => 'ama', 'MSTRG.2702' => 'ama', 'MSTRG.27227' => 'ama', 'MSTRG.5435' => 'ama', 'MSTRG.8854' => 'ama', 'Nitab4.5_0000510g0010' => 'nta', 'Nitab4.5_0000965g0070' => 'nta', 'Nitab4.5_0001133g0070' => 'nta', 'Nitab4.5_0001293g0010' => 'nta', 'Nitab4.5_0001812g0070' => 'nta', 'Nitab4.5_0002096g0060' => 'nta', 'Nitab4.5_0002359g0030' => 'nta', 'Nitab4.5_0003321g0060' => 'nta', 'Nitab4.5_0004254g0050' => 'nta', 'Nitab4.5_0004279g0020' => 'nta', 'Nitab4.5_0004457g0010' => 'nta', 'Nitab4.5_0005721g0040' => 'nta', 'Nitab4.5_0006862g0010' => 'nta', 'Nitab4.5_0010885g0050' => 'nta', 'Nitab4.5_0019028g0010' => 'nta', 'Nn3g17928' => 'nnu', 'Nn4g23929' => 'nnu', 'Nn5g29274' => 'nnu', 'Nn5g29276' => 'nnu', 'Nn6g32304' => 'nnu', 'Nn6g33790' => 'nnu', 'Oeu006082.1' => 'oeu', 'Oeu026429.1' => 'oeu', 'Oeu035303.1' => 'oeu', 'Oeu044189.1' => 'oeu', 'Oeu060412.1' => 'oeu', 'Oeu062503.1' => 'oeu', 'Oeu062504.1' => 'oeu', 'Os04g0118500' => 'osa', 'Os04g0482000' => 'osa', 'Os04g0482100' => 'osa', 'Os04g0663800' => 'osa', 'Os06g0138100' => 'osa', 'Os10g0563600' => 'osa', 'Peaxi162Scf00083g00821' => 'pax', 'Peaxi162Scf00089g01021' => 'pax', 'Peaxi162Scf00304g01021' => 'pax', 'Peaxi162Scf00304g01028' => 'pax', 'Peaxi162Scf00343g00088' => 'pax', 'Peaxi162Scf00343g00089' => 'pax', 'Peaxi162Scf00362g01151' => 'pax', 'Peaxi162Scf00799g00517' => 'pax', 'Peaxi162Scf01305g00002' => 'pax', 'PGR042G1334' => 'pgr', 'PGR083G1008' => 'pgr', 'PGR102G1785' => 'pgr', 'PGR119G1393' => 'pgr', 'PGSC0003DMG400001617' => 'stu', 'PGSC0003DMG400003634' => 'stu', 'PGSC0003DMG400010414' => 'stu', 'PGSC0003DMG400015228' => 'stu', 'PGSC0003DMG400019933' => 'stu', 'PGSC0003DMG400021003' => 'stu', 'PGSC0003DMG400021589' => 'stu', 'Phvul.003G260800' => 'pvu', 'Phvul.003G260900' => 'pvu', 'Phvul.006G043000' => 'pvu', 'Phvul.008G267100' => 'pvu', 'Phvul.009G170700' => 'pvu', 'Potri.007G012900' => 'ptr', 'Potri.007G013400' => 'ptr', 'Potri.012G091100' => 'ptr', 'Potri.012G115800' => 'ptr', 'Potri.015G087600' => 'ptr', 'Potri.015G112268' => 'ptr', 'Pp3c10_25090' => 'ppa', 'Pp3c10_640' => 'ppa', 'Pp3c11_4080' => 'ppa', 'Pp3c11_7270' => 'ppa', 'Pp3c19_10080' => 'ppa', 'Pp3c20_23120' => 'ppa', 'Pp3c21_21080' => 'ppa', 'Pp3c2_32520' => 'ppa', 'Pp3c7_26010' => 'ppa', 'PRCOL_00000227' => 'pco', 'PRCOL_00000823' => 'pco', 'PRCOL_00004809' => 'pco', 'PRCOL_00005246' => 'pco', 'PRCOL_00006119' => 'pco', 'Prupe.1G202600' => 'ppe', 'Prupe.1G202800' => 'ppe', 'Prupe.2G271200' => 'ppe', 'Prupe.5G161000' => 'ppe', 'Psat2g010960' => 'psa', 'Psat4g098480' => 'psa', 'Psat4g098520' => 'psa', 'Psat5g117240' => 'psa', 'Psat5g180200' => 'psa', 'PSO170G2420' => 'pso', 'PSO210G3301' => 'pso', 'PSO210G7505' => 'pso', 'PSO541G4766' => 'pso', 'PSO675G0258' => 'pso', 'PSO675G5905' => 'pso', 'PSO732G0586' => 'pso', 'QL06p033557' => 'qlo', 'QL06p033570' => 'qlo', 'QL09p027654' => 'qlo', 'QL10p005823' => 'qlo', 'RcHm_v2.0_Chr0c32g0501451' => 'rch', 'RcHm_v2.0_Chr0c32g0501631' => 'rch', 'RcHm_v2.0_Chr0c32g0501641' => 'rch', 'RcHm_v2.0_Chr1g0373491' => 'rch', 'RcHm_v2.0_Chr3g0483651' => 'rch', 'RcHm_v2.0_Chr3g0483661' => 'rch', 'RcHm_v2.0_Chr3g0483821' => 'rch', 'RcHm_v2.0_Chr7g0191801' => 'rch', 'Rhsim03G0159700' => 'rsi', 'Rhsim03G0159800' => 'rsi', 'Rhsim05G0067500' => 'rsi', 'Rhsim08G0034300' => 'rsi', 'Rhsim09G0188800' => 'rsi', 'Rhsim10G0069500' => 'rsi', 'Rhsim12G0170600' => 'rsi', 'Sabra07G0009900' => 'sbr', 'Sabra07G0010400' => 'sbr', 'Sabra12G0065900' => 'sbr', 'Sabra12G0083900' => 'sbr', 'Sabra15G0134000' => 'sbr', 'SalBow3G3053' => 'sbo', 'SalBow3G3608' => 'sbo', 'SalBow3G3717' => 'sbo', 'SalBow5G0692' => 'sbo', 'SalBow5G0850' => 'sbo', 'Sc01g0007920' => 'sci', 'Sc16g0002050' => 'sci', 'Sc16g0002060' => 'sci', 'Sc18g0002580' => 'sci', 'Sc22g0004210' => 'sci', 'Sed0008436' => 'sed', 'Sed0008902' => 'sed', 'Sed0009156' => 'sed', 'Sed0020033' => 'sed', 'Sed0020173' => 'sed', 'Sed0024520' => 'sed', 'SEGI_07022' => 'sgi', 'SEGI_08967' => 'sgi', 'SEGI_21758' => 'sgi', 'SEGI_35938' => 'sgi', 'SGA_v2.0_scaffold137G35079' => 'sas', 'SGA_v2.0_scaffold32G13256' => 'sas', 'SGA_v2.0_scaffold44G16584' => 'sas', 'SGA_v2.0_scaffold58G20433' => 'sas', 'SGA_v2.0_scaffold60G20836' => 'sas', 'SGA_v2.0_scaffold90G27787' => 'sas', 'SMO116G0393' => 'smo', 'SMO119G0025' => 'smo', 'SMO133G0043' => 'smo', 'SMO146G0274' => 'smo', 'SMO197G0117' => 'smo', 'SMO239G0133' => 'smo', 'SMO239G0139' => 'smo', 'SMO239G0160' => 'smo', 'Solyc01g110530.3' => 'sly', 'Solyc02g062250.3' => 'sly', 'Solyc02g063250.3' => 'sly', 'Solyc02g084030.3' => 'sly', 'Solyc03g093690.3' => 'sly', 'Solyc03g111720.3' => 'sly', 'Solyc06g034020.3' => 'sly', 'Sopen01g052660' => 'spe', 'Sopen02g013220' => 'spe', 'Sopen02g014320' => 'spe', 'Sopen02g028830' => 'spe', 'Sopen03g024590' => 'spe', 'Sopen03g030840' => 'spe', 'Sopen06g014010' => 'spe', 'Sp2g24850' => 'spa', 'Sp3g31460' => 'spa', 'Sp3g31470' => 'spa', 'Sp6g35400' => 'spa', 'Sp6g35410' => 'spa', 'Sp7g23130' => 'spa', 'TAR004G0002' => 'tar', 'TAR374G0417' => 'tar', 'TAR374G0879' => 'tar', 'TAR374G1744' => 'tar', 'TAR376G0878' => 'tar', 'TAR381G1630' => 'tar', 'TAR622G0613' => 'tar', 'TAR622G0940' => 'tar', 'TAR625G0006' => 'tar', 'TAR625G1510' => 'tar', 'TAR628G0680' => 'tar', 'TAR629G0427' => 'tar', 'TAR629G3166' => 'tar', 'TAR636G2111' => 'tar', 'THA.LOC104801647' => 'tha', 'THA.LOC104807488' => 'tha', 'THA.LOC104807489' => 'tha', 'THA.LOC104808272' => 'tha', 'THA.LOC104818301' => 'tha', 'THA.LOC104819758' => 'tha', 'Thecc.01G020800' => 'tca', 'Thecc.01G020900' => 'tca', 'Thecc.03G119200' => 'tca', 'Thecc.03G146500' => 'tca', 'Thecc.04G130000' => 'tca', 'Thhalv10004938m.g' => 'esa', 'Thhalv10014609m.g' => 'esa', 'Thhalv10014718m.g' => 'esa', 'Thhalv10022823m.g' => 'esa', 'Thhalv10022913m.g' => 'esa', 'Thhalv10025928m.g' => 'esa', 'TPR.G1223' => 'tpr', 'TPR.G16569' => 'tpr', 'TPR.G30057' => 'tpr', 'TPR.G30060' => 'tpr', 'TPR.G6319' => 'tpr', 'TWI09G0609' => 'twi', 'TWI09G0870' => 'twi', 'TWI23G0889' => 'twi', 'TWI39G0133' => 'twi', 'TWI39G0916' => 'twi', 'TWI53G1676' => 'twi', 'unitig_37.g12157' => 'ugi', 'unitig_37.g12484' => 'ugi', 'unitig_61.g26468' => 'ugi', 'unitig_699.g19711' => 'ugi', 'vmacro06844' => 'vma', 'vmacro09928' => 'vma', 'vmacro16692' => 'vma', 'vmacro17410' => 'vma', 'vmacro18419' => 'vma', 'vmacro18420' => 'vma', 'VMungo0251G2049' => 'vmu', 'VMungo0289G0001' => 'vmu', 'VMungo0540G0274' => 'vmu', 'VMungo0647G2581' => 'vmu', 'VMungo1057G0002' => 'vmu', 'VMungo1309G2601' => 'vmu', 'Zm00001eb023810' => 'zma', 'Zm00001eb067280' => 'zma', 'Zm00001eb079380' => 'zma', 'Zm00001eb106800' => 'zma', 'Zm00001eb170750' => 'zma', 'Zm00001eb377760' => 'zma', 'Zm00001eb419950' => 'zma' ) $gf_id = 'HOM05D000811' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000811' ) $data_identifier = 'HOM05D000811' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 9, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 13, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 10, 'cde' => (int) 9, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 9, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 9, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 9, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 15, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 9, 'pco' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 7, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 6, 'smo' => (int) 8, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 14, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419950' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1